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<p class="MsoNormal"><span style="font-family:"Courier New"">Hello,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">our machine is up and running again and I tried a new compile using the rpms from a couple of days ago.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">Compile went ok, I used cmake and didn’t use mpi wrappers from clang, but instead invoked cmake with the following cache vars (at end of email) to hopefully give the same result.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">When executing a test job, I get an unexpected error
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">[biddisco@bbpbg1 testing]$ salloc -N 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">salloc: Granted job allocation 2120<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">salloc: Block RMP18Se222856626 is ready for job<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">[biddisco@bbpbg1 testing]$ srun -n 1 /scratch5_256_1/bgq/biddisco/build/hdftests/bin/TestHDF5Compound<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">2013-09-18 22:35:31.802 (FATAL) [0xfffb6688cd0] 20651:ibm.runjob.client.Job: could not start job: job failed to start<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">2013-09-18 22:35:31.803 (FATAL) [0xfffb6688cd0] 20651:ibm.runjob.client.Job: Load failed on Q04-I2-J01: Application executable ELF header contains invalid value, errno 8 Exec format error<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">Looks as though I’ve somehow compiled for the wrong architecture. Is there an easy fix like some missing compile flag/option?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">many thanks<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">JB<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">using <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">export CC=~/bgclang/bin/clang<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">export CXX=~/bgclang/bin/clang++<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">cmake cache vars ….<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(ppcflr /bgsys/drivers/ppcfloor)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(BUILD_SHARED_LIBS 0 CACHE BOOL "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(CMAKE_CXX_FLAGS " -I${ppcflr}/comm/lib/gnu -I${ppcflr} -I${ppcflr}/comm/sys/include -I${ppcflr}/spi/include -I${ppcflr}/spi/include/kernel/cnk" CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(CMAKE_C_FLAGS " -I${ppcflr}/comm/lib/gnu -I${ppcflr} -I${ppcflr}/comm/sys/include -I${ppcflr}/spi/include -I${ppcflr}/spi/include/kernel/cnk" CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(CMAKE_EXE_LINKER_FLAGS " -L${ppcflr}/comm/lib -L${ppcflr}/comm/lib -L${ppcflr}/comm/lib64 -L${ppcflr}/comm/lib -L${ppcflr}/spi/lib -L${ppcflr}/comm/sys/lib -L${ppcflr}/spi/l<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">ib -L${ppcflr}/comm/sys/lib -L${ppcflr}/comm/lib64 -L${ppcflr}/comm/lib -L${ppcflr}/spi/lib" CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(MPI_C_INCLUDE_PATH /bgsys/drivers/ppcfloor/comm/include CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(MPI_CXX_INCLUDE_PATH /bgsys/drivers/ppcfloor/comm/include CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(MPI_EXTRA_LIBRARY mpi-gcc;opa-gcc;mpl-gcc;pami-gcc;SPI;SPI_cnk;rt;pthread;stdc++;pthread CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(MPI_LIBRARY mpi-gcc CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(MPI_CXX_LIBRARIES "mpich-gcc;opa-gcc;mpl-gcc;pami-gcc;SPI;SPI_cnk;rt;pthread;stdc++;pthread" CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">set(MPI_C_LIBRARIES "mpich-gcc;opa-gcc;mpl-gcc;pami-gcc;SPI;SPI_cnk;rt;pthread;stdc++;pthread" CACHE STRING "")<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Courier New";color:#1F497D;mso-fareast-language:EN-GB">--
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Courier New";color:#1F497D;mso-fareast-language:EN-GB">John Biddiscombe, email:biddisco @.at.@ cscs.ch<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Courier New";color:#1F497D;mso-fareast-language:EN-GB"><a href="http://www.cscs.ch/"><span style="color:blue">http://www.cscs.ch/</span></a><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:10.5pt;font-family:"Courier New";color:#1F497D;mso-fareast-language:EN-GB">CSCS, Swiss National Supercomputing Centre | Tel: +41 (91) 610.82.07<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="IT-CH" style="font-size:10.5pt;font-family:"Courier New";color:#1F497D;mso-fareast-language:EN-GB">Via Trevano 131, 6900 Lugano, Switzerland | Fax: +41 (91) 610.82.82<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="IT-CH" style="font-family:"Courier New""><o:p> </o:p></span></p>
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