[Llvm-bgq-discuss] total view with clang bgq
Hal Finkel
hfinkel at anl.gov
Mon May 5 06:13:04 CDT 2014
----- Original Message -----
> From: "John A. Biddiscombe" <biddisco at cscs.ch>
> To: "Hal Finkel" <hfinkel at anl.gov>
> Cc: llvm-bgq-discuss at lists.alcf.anl.gov
> Sent: Monday, May 5, 2014 6:08:01 AM
> Subject: RE: [Llvm-bgq-discuss] total view with clang bgq
>
> NB. Thought : Is it possible my clang is picking up the wrong c++
> libs (bad LD_LIBRARY_PATH during compilation?)
That's possible. You're seeing an internal compiler error. I'm not sure you're doing anything wrong except being unlucky, but I do see that pth is enabled, and I've run into problems with pth (pre-compiled headers) before. Boost always turns them on my default, but I'd trying disabling them in the build config and trying again.
-Hal
>
> JB
>
> > -----Original Message-----
> > From: Hal Finkel [mailto:hfinkel at anl.gov]
> > Sent: 05 May 2014 13:02
> > To: Biddiscombe, John A.
> > Cc: llvm-bgq-discuss at lists.alcf.anl.gov
> > Subject: Re: [Llvm-bgq-discuss] total view with clang bgq
> >
> > ----- Original Message -----
> > > From: "John A. Biddiscombe" <biddisco at cscs.ch>
> > > To: "Hal Finkel" <hfinkel at anl.gov>
> > > Cc: llvm-bgq-discuss at lists.alcf.anl.gov
> > > Sent: Monday, May 5, 2014 5:36:47 AM
> > > Subject: RE: [Llvm-bgq-discuss] total view with clang bgq
> > >
> > > Hal
> > >
> > > I had some success building simplish projects, but now I'm back
> > > to
> > > some bigger stuff.
> > > I have setup the r206161-20140414 release (up until now I was
> > > using
> > > r205936-20140409).
> > >
> > > When compiling boost as follows
> > > ./bootstrap.sh --with-toolset=clang
> > > --prefix=/gpfs/bbp.cscs.ch/home/biddisco/apps/clang/boost_1_55_0
> > >
> > > ./b2 toolset=clang cxxflags="-mcpu=a2
> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/
> > > c++/4.7.2/
> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/
> > > c++/4.7.2/powerpc64-bgq-linux
> > > -std=gnu++11 -DBOOST_NO_FENV_H"
> > > --prefix=/gpfs/bbp.cscs.ch/home/biddisco/apps/clang/boost_1_55_0
> > > --layout=versioned architecture=power threading=multi link=shared
> > > variant=debug -j12 install
> > >
> > > I get a lot of these ...(see below).
> > > My suspicion is that the bgclang scripts pass additional params
> > > to
> > > clang which get around this (because otherwise you'd have got
> > > these
> > > errors too no doubt). Are there any things I should be looking
> > > for in
> > > bgclang that are not passed to clang using my command line?
> >
> > I've not seen this error before. Try building without pth support
> > enabled.
> >
> > I'm also working on a rebase, so there should be a new version to
> > test soon.
> >
> > -Hal
> >
> > >
> > > thanks
> > >
> > > JB
> > >
> > > "clang++" -c -x c++ -mcpu=a2
> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
> > linux/include/c++/4.7.2/
> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
> > linux/include/c++/4.7.2/powerpc64-bgq-linux
> > > -std=gnu++11 -DBOOST_NO_FENV_H -O0 -g -Winvalid-pch -fno-inline
> > > -Wall -g -pthread -fPIC -mcpu=a2
> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
> > linux/include/c++/4.7.2/
> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
> > linux/include/c++/4.7.2/powerpc64-bgq-linux
> > > -std=gnu++11 -DBOOST_NO_FENV_H -Winvalid-pch -
> > DBOOST_ALL_NO_LIB=1
> > > -DBOOST_BUILD_PCH_ENABLED -DBOOST_MATH_TR1_DYN_LINK=1 -I"."
> > > -I"libs/math/src/tr1" -Xclang -include-pth -Xclang
> > > "bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-
> > power/threading-multi/../src/tr1/pch.hpp.pth"
> > > -o
> > > "bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-
> > power/threading-multi/comp_ellint_3.o"
> > > "libs/math/build/../src/tr1/comp_ellint_3.cpp"
> > >
> > > ...failed clang-linux.compile.c++.with-pch
> > > bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-
> > power/threading-multi/comp_ellint_3.o...
> > > clang-linux.compile.c++.with-pch
> > > bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-power/thre
> > > ading-multi/assoc_laguerre.o
> > > clang:
> > > /gpfs/vesta-
> > home/hfinkel/rpmbuild/BUILD/llvm/tools/clang/lib/Basic/SourceManager.cp
> > p:2113:
> > > bool
> > > clang::SourceManager::isBeforeInTranslationUnit(clang::SourceLocation,
> > > clang::SourceLocation) const: Assertion `LIsBuiltins &&
> > > RIsBuiltins &&
> > > "Non-built-in locations must be rooted in the main file"' failed.
> > > 0 libLLVM-3.5.0svn.so 0x00000fff853a1058
> > > llvm::sys::PrintStackTrace(_IO_FILE*) + 4280956016
> > > 1 libLLVM-3.5.0svn.so 0x00000fff853a12f4
> > > 2 libLLVM-3.5.0svn.so 0x00000fff853a1770
> > > 3 0x00000fff86160448 __kernel_sigtramp_rt64
> > > + 0
> > > 4 libc.so.6 0x00000080a0be6ea8 abort + 4293479768
> > > 5 libc.so.6 0x00000080a0bdb92c
> > > 6 libc.so.6 0x00000080a0bdba44 __assert_fail +
> > > 4293437396
> > > 7 clang 0x0000000011543118
> > > clang::SourceManager::isBeforeInTranslationUnit(clang::SourceLocation,
> > > clang::SourceLocation) const + 4290617904
> > > 8 clang 0x00000000113f5f70
> > > clang::RawCommentList::addComment(clang::RawComment const&,
> > > llvm::BumpPtrAllocatorImpl<llvm::MallocSlabAllocator, 4096ul,
> > > 4096ul>&) + 4289293880
> > > 9 clang 0x000000001073f3a8
> > > clang::Sema::ActOnComment(clang::SourceRange) + 4276277792
> > > 10 clang 0x000000001067f594
> > > 11 clang 0x0000000011500920
> > > clang::Preprocessor::HandleComment(clang::Token&,
> > > clang::SourceRange) + 4290354144
> > > 12 clang 0x00000000114a8e8c
> > > clang::Lexer::SkipLineComment(clang::Token&, char const*, bool&)
> > > +
> > > 4290004852
> > > 13 clang 0x00000000114ac158
> > > clang::Lexer::LexTokenInternal(clang::Token&, bool) + 4290017544
> > > 14 clang 0x00000000114aa084
> > > clang::Lexer::Lex(clang::Token&) + 4290009356
> > > 15 clang 0x00000000114ff99c
> > > clang::Preprocessor::Lex(clang::Token&) + 4290350340
> > > 16 clang 0x000000001067504c
> > > 17 clang 0x00000000106a1fa8
> > > clang::Parser::ParseInnerNamespace(std::__1::vector<clang::SourceLocat
> > > ion, std::__1::allocator<clang::SourceLocation> >&,
> > > std::__1::vector<clang::IdentifierInfo*,
> > > std::__1::allocator<clang::IdentifierInfo*> >&,
> > > std::__1::vector<clang::SourceLocation,
> > > std::__1::allocator<clang::SourceLocation> >&, unsigned int,
> > > clang::SourceLocation&, clang::ParsedAttributes&,
> > > clang::BalancedDelimiterTracker&) + 4275650184
> > > 18 clang 0x00000000106a11fc
> > > clang::Parser::ParseNamespace(unsigned int,
> > > clang::SourceLocation&,
> > > clang::SourceLocation) + 4275646732
> > > 19 clang 0x0000000010689d18
> > > clang::Parser::ParseDeclaration(llvm::SmallVector<clang::Stmt*,
> > > 32u>&, unsigned int, clang::SourceLocation&,
> > > clang::Parser::ParsedAttributesWithRange&) + 4275552448
> > > 20 clang 0x000000001067792c
> > > clang::Parser::ParseExternalDeclaration(clang::Parser::ParsedAttribute
> > > sWithRange&,
> > > clang::ParsingDeclSpec*) + 4275479708
> > > 21 clang 0x0000000010677160
> > > clang::Parser::ParseTopLevelDecl(clang::OpaquePtr<clang::DeclGroupRef>
> > > &)
> > > + 4275477736
> > > 22 clang 0x00000000106725e4
> > > clang::ParseAST(clang::Sema&, bool, bool) + 4275459060
> > > 23 clang 0x00000000101e3260
> > > clang::ASTFrontendAction::ExecuteAction() + 4270804464
> > > 24 clang 0x000000001040a490
> > > clang::CodeGenAction::ExecuteAction() + 4272996328
> > > 25 clang 0x00000000101e28b4
> > > clang::FrontendAction::Execute() + 4270802060
> > > 26 clang 0x00000000101addd4
> > > clang::CompilerInstance::ExecuteAction(clang::FrontendAction&) +
> > > 4270589116
> > > 27 clang 0x000000001018a9b0
> > > clang::ExecuteCompilerInvocation(clang::CompilerInstance*) +
> > > 4270451632
> > > 28 clang 0x000000001017f314 cc1_main(char const**,
> > > char
> > > const**, char const*, void*) + 4270405844
> > > 29 clang 0x0000000010187cc4 main + 4270440492
> > > 30 libc.so.6 0x00000080a0bcbcf8
> > > 31 libc.so.6 0x00000080a0bcbef0 __libc_start_main +
> > > 4293374496
> > > Stack dump:
> > > 0. Program arguments:
> > > /gpfs/bbp.cscs.ch/home/biddisco/apps/clang/bgclang/r206161-
> > 20140414/bi
> > > n/clang
> > > -cc1 -triple powerpc64-unknown-linux-gnu -S -disable-free
> > > -main-file-name assoc_laguerre.cpp -mrelocation-model pic
> > > -pic-level
> > > 2 -mdisable-fp-elim -fmath-errno -no-integrated-as
> > > -mconstructor-aliases -target-cpu a2 -target-linker-version
> > > 2.20.51.0.2 -g -coverage-file /tmp/assoc_laguerre-131f32.s
> > > -resource-dir
> > > /gpfs/bbp.cscs.ch/home/biddisco/apps/clang/bgclang/r206161-
> > 20140414/bi
> > > n/../lib/clang/3.5.0 -D BOOST_NO_FENV_H -D BOOST_NO_FENV_H -D
> > > BOOST_ALL_NO_LIB=1 -D BOOST_BUILD_PCH_ENABLED -D
> > > BOOST_MATH_TR1_DYN_LINK=1 -I
> > > /bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
> > > +/4.7.2/
> > > -I
> > > /bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
> > > +/4.7.2/powerpc64-bgq-linux
> > > -I
> > > /bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
> > > +/4.7.2/
> > > -I
> > > /bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
> > > +/4.7.2/powerpc64-bgq-linux -I . -I libs/math/src/tr1
> > > -internal-isystem
> > > /usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/c++/4.4.7
> > > -internal-isystem
> > > /usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/pp
> > > c64-redhat-linux
> > > -internal-isystem
> > > /usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ba
> > > ckward
> > > -internal-isystem
> > > /usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/ppc64-redhat
> > > -linux/c++/4.4.7 -internal-isystem /usr/local/include
> > > -internal-isystem
> > > /gpfs/bbp.cscs.ch/home/biddisco/apps/clang/bgclang/r206161-
> > 20140414/bi
> > > n/../lib/clang/3.5.0/include -internal-externc-isystem /include
> > > -internal-externc-isystem /usr/include -O0 -Winvalid-pch -Wall
> > > -Winvalid-pch -std=gnu++11 -fdeprecated-macro
> > > -fno-dwarf-directory-asm
> > > -fdebug-compilation-dir
> > > /gpfs/bbp.cscs.ch/home/biddisco/bgas/clang/build/boost_1_55_0
> > > -ferror-limit 19 -fmessage-length 0 -pthread -mstackrealign
> > > -fno-signed-char -fno-inline -fobjc-runtime=gcc -fcxx-exceptions
> > > -fexceptions -fdiagnostics-show-option -vectorize-slp
> > > -include-pth
> > > bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-power/thre
> > > ading-multi/../src/tr1/pch.hpp.pth
> > > -o /tmp/assoc_laguerre-131f32.s -x c++
> > > libs/math/build/../src/tr1/assoc_laguerre.cpp
> > > 1. <unknown> parser at unknown location
> > > 2. ./boost/math/special_functions/hankel.hpp:12:1: parsing
> > namespace
> > > 'boost'
> > > clang: error: unable to execute command: Aborted (core dumped)
> > > clang: error: clang frontend command failed due to signal (use -v
> > > to
> > > see invocation) clang version 3.5.0 (trunk)
> > > Target: powerpc64-unknown-linux-gnu
> > > Thread model: posix
> > > clang: note: diagnostic msg: PLEASE submit a bug report to
> > > http://llvm.org/bugs/ and include the crash backtrace,
> > > preprocessed
> > > source, and associated run script.
> > > clang: note: diagnostic msg:
> > > ********************
> > >
> > > PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
> > > Preprocessed source(s) and associated run script(s) are located
> > > at:
> > > clang: note: diagnostic msg: /tmp/assoc_laguerre-ba076b.cpp
> > > clang: note: diagnostic msg: /tmp/assoc_laguerre-ba076b.sh
> > > clang: note: diagnostic msg:
> > >
> > > ********************
> > >
> >
> > --
> > Hal Finkel
> > Assistant Computational Scientist
> > Leadership Computing Facility
> > Argonne National Laboratory
>
--
Hal Finkel
Assistant Computational Scientist
Leadership Computing Facility
Argonne National Laboratory
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