[Llvm-bgq-discuss] total view with clang bgq
Biddiscombe, John A.
biddisco at cscs.ch
Mon May 5 16:14:26 CDT 2014
Hal,
Yup. Disabling pch fixed the problem. Thanks.
Boost and hpx are compiled after I made some tweaks to the bgq specific
bits. (I’ve got one error on launch which I can’t seem to fix, but I don’t
think this is clang related unless there’s some name mangling that is
causing the trouble).
JB
symbol lookup error:
/gpfs/bbp.cscs.ch/home/biddisco/apps/clang/hpx/lib/hpx/libhpxd.so.0:
undefined symbol:
_ZNK5boost15program_options29value_semantic_codecvt_helperIcE5parseERNS_3an
yERKNSt3__16vectorINS5_12basic_stringIcNS5_11char_traitsIcEENS5_9allocatorI
cEEEENSA_ISC_EEEEb
On 05/05/14 13:13, "Hal Finkel" <hfinkel at anl.gov> wrote:
>----- Original Message -----
>> From: "John A. Biddiscombe" <biddisco at cscs.ch>
>> To: "Hal Finkel" <hfinkel at anl.gov>
>> Cc: llvm-bgq-discuss at lists.alcf.anl.gov
>> Sent: Monday, May 5, 2014 6:08:01 AM
>> Subject: RE: [Llvm-bgq-discuss] total view with clang bgq
>>
>> NB. Thought : Is it possible my clang is picking up the wrong c++
>> libs (bad LD_LIBRARY_PATH during compilation?)
>
>That's possible. You're seeing an internal compiler error. I'm not sure
>you're doing anything wrong except being unlucky, but I do see that pth
>is enabled, and I've run into problems with pth (pre-compiled headers)
>before. Boost always turns them on my default, but I'd trying disabling
>them in the build config and trying again.
>
> -Hal
>
>>
>> JB
>>
>> > -----Original Message-----
>> > From: Hal Finkel [mailto:hfinkel at anl.gov]
>> > Sent: 05 May 2014 13:02
>> > To: Biddiscombe, John A.
>> > Cc: llvm-bgq-discuss at lists.alcf.anl.gov
>> > Subject: Re: [Llvm-bgq-discuss] total view with clang bgq
>> >
>> > ----- Original Message -----
>> > > From: "John A. Biddiscombe" <biddisco at cscs.ch>
>> > > To: "Hal Finkel" <hfinkel at anl.gov>
>> > > Cc: llvm-bgq-discuss at lists.alcf.anl.gov
>> > > Sent: Monday, May 5, 2014 5:36:47 AM
>> > > Subject: RE: [Llvm-bgq-discuss] total view with clang bgq
>> > >
>> > > Hal
>> > >
>> > > I had some success building simplish projects, but now I'm back
>> > > to
>> > > some bigger stuff.
>> > > I have setup the r206161-20140414 release (up until now I was
>> > > using
>> > > r205936-20140409).
>> > >
>> > > When compiling boost as follows
>> > > ./bootstrap.sh --with-toolset=clang
>> > > --prefix=/gpfs/bbp.cscs.ch/home/biddisco/apps/clang/boost_1_55_0
>> > >
>> > > ./b2 toolset=clang cxxflags="-mcpu=a2
>> > >
>>-I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/
>> > > c++/4.7.2/
>> > >
>>-I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/
>> > > c++/4.7.2/powerpc64-bgq-linux
>> > > -std=gnu++11 -DBOOST_NO_FENV_H"
>> > > --prefix=/gpfs/bbp.cscs.ch/home/biddisco/apps/clang/boost_1_55_0
>> > > --layout=versioned architecture=power threading=multi link=shared
>> > > variant=debug -j12 install
>> > >
>> > > I get a lot of these ...(see below).
>> > > My suspicion is that the bgclang scripts pass additional params
>> > > to
>> > > clang which get around this (because otherwise you'd have got
>> > > these
>> > > errors too no doubt). Are there any things I should be looking
>> > > for in
>> > > bgclang that are not passed to clang using my command line?
>> >
>> > I've not seen this error before. Try building without pth support
>> > enabled.
>> >
>> > I'm also working on a rebase, so there should be a new version to
>> > test soon.
>> >
>> > -Hal
>> >
>> > >
>> > > thanks
>> > >
>> > > JB
>> > >
>> > > "clang++" -c -x c++ -mcpu=a2
>> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
>> > linux/include/c++/4.7.2/
>> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
>> > linux/include/c++/4.7.2/powerpc64-bgq-linux
>> > > -std=gnu++11 -DBOOST_NO_FENV_H -O0 -g -Winvalid-pch -fno-inline
>> > > -Wall -g -pthread -fPIC -mcpu=a2
>> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
>> > linux/include/c++/4.7.2/
>> > > -I/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-
>> > linux/include/c++/4.7.2/powerpc64-bgq-linux
>> > > -std=gnu++11 -DBOOST_NO_FENV_H -Winvalid-pch -
>> > DBOOST_ALL_NO_LIB=1
>> > > -DBOOST_BUILD_PCH_ENABLED -DBOOST_MATH_TR1_DYN_LINK=1 -I"."
>> > > -I"libs/math/src/tr1" -Xclang -include-pth -Xclang
>> > > "bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-
>> > power/threading-multi/../src/tr1/pch.hpp.pth"
>> > > -o
>> > > "bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-
>> > power/threading-multi/comp_ellint_3.o"
>> > > "libs/math/build/../src/tr1/comp_ellint_3.cpp"
>> > >
>> > > ...failed clang-linux.compile.c++.with-pch
>> > > bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-
>> > power/threading-multi/comp_ellint_3.o...
>> > > clang-linux.compile.c++.with-pch
>> > >
>>bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-power/thre
>> > > ading-multi/assoc_laguerre.o
>> > > clang:
>> > > /gpfs/vesta-
>> >
>>home/hfinkel/rpmbuild/BUILD/llvm/tools/clang/lib/Basic/SourceManager.cp
>> > p:2113:
>> > > bool
>> > >
>>clang::SourceManager::isBeforeInTranslationUnit(clang::SourceLocation,
>> > > clang::SourceLocation) const: Assertion `LIsBuiltins &&
>> > > RIsBuiltins &&
>> > > "Non-built-in locations must be rooted in the main file"' failed.
>> > > 0 libLLVM-3.5.0svn.so 0x00000fff853a1058
>> > > llvm::sys::PrintStackTrace(_IO_FILE*) + 4280956016
>> > > 1 libLLVM-3.5.0svn.so 0x00000fff853a12f4
>> > > 2 libLLVM-3.5.0svn.so 0x00000fff853a1770
>> > > 3 0x00000fff86160448 __kernel_sigtramp_rt64
>> > > + 0
>> > > 4 libc.so.6 0x00000080a0be6ea8 abort + 4293479768
>> > > 5 libc.so.6 0x00000080a0bdb92c
>> > > 6 libc.so.6 0x00000080a0bdba44 __assert_fail +
>> > > 4293437396
>> > > 7 clang 0x0000000011543118
>> > >
>>clang::SourceManager::isBeforeInTranslationUnit(clang::SourceLocation,
>> > > clang::SourceLocation) const + 4290617904
>> > > 8 clang 0x00000000113f5f70
>> > > clang::RawCommentList::addComment(clang::RawComment const&,
>> > > llvm::BumpPtrAllocatorImpl<llvm::MallocSlabAllocator, 4096ul,
>> > > 4096ul>&) + 4289293880
>> > > 9 clang 0x000000001073f3a8
>> > > clang::Sema::ActOnComment(clang::SourceRange) + 4276277792
>> > > 10 clang 0x000000001067f594
>> > > 11 clang 0x0000000011500920
>> > > clang::Preprocessor::HandleComment(clang::Token&,
>> > > clang::SourceRange) + 4290354144
>> > > 12 clang 0x00000000114a8e8c
>> > > clang::Lexer::SkipLineComment(clang::Token&, char const*, bool&)
>> > > +
>> > > 4290004852
>> > > 13 clang 0x00000000114ac158
>> > > clang::Lexer::LexTokenInternal(clang::Token&, bool) + 4290017544
>> > > 14 clang 0x00000000114aa084
>> > > clang::Lexer::Lex(clang::Token&) + 4290009356
>> > > 15 clang 0x00000000114ff99c
>> > > clang::Preprocessor::Lex(clang::Token&) + 4290350340
>> > > 16 clang 0x000000001067504c
>> > > 17 clang 0x00000000106a1fa8
>> > >
>>clang::Parser::ParseInnerNamespace(std::__1::vector<clang::SourceLocat
>> > > ion, std::__1::allocator<clang::SourceLocation> >&,
>> > > std::__1::vector<clang::IdentifierInfo*,
>> > > std::__1::allocator<clang::IdentifierInfo*> >&,
>> > > std::__1::vector<clang::SourceLocation,
>> > > std::__1::allocator<clang::SourceLocation> >&, unsigned int,
>> > > clang::SourceLocation&, clang::ParsedAttributes&,
>> > > clang::BalancedDelimiterTracker&) + 4275650184
>> > > 18 clang 0x00000000106a11fc
>> > > clang::Parser::ParseNamespace(unsigned int,
>> > > clang::SourceLocation&,
>> > > clang::SourceLocation) + 4275646732
>> > > 19 clang 0x0000000010689d18
>> > > clang::Parser::ParseDeclaration(llvm::SmallVector<clang::Stmt*,
>> > > 32u>&, unsigned int, clang::SourceLocation&,
>> > > clang::Parser::ParsedAttributesWithRange&) + 4275552448
>> > > 20 clang 0x000000001067792c
>> > >
>>clang::Parser::ParseExternalDeclaration(clang::Parser::ParsedAttribute
>> > > sWithRange&,
>> > > clang::ParsingDeclSpec*) + 4275479708
>> > > 21 clang 0x0000000010677160
>> > >
>>clang::Parser::ParseTopLevelDecl(clang::OpaquePtr<clang::DeclGroupRef>
>> > > &)
>> > > + 4275477736
>> > > 22 clang 0x00000000106725e4
>> > > clang::ParseAST(clang::Sema&, bool, bool) + 4275459060
>> > > 23 clang 0x00000000101e3260
>> > > clang::ASTFrontendAction::ExecuteAction() + 4270804464
>> > > 24 clang 0x000000001040a490
>> > > clang::CodeGenAction::ExecuteAction() + 4272996328
>> > > 25 clang 0x00000000101e28b4
>> > > clang::FrontendAction::Execute() + 4270802060
>> > > 26 clang 0x00000000101addd4
>> > > clang::CompilerInstance::ExecuteAction(clang::FrontendAction&) +
>> > > 4270589116
>> > > 27 clang 0x000000001018a9b0
>> > > clang::ExecuteCompilerInvocation(clang::CompilerInstance*) +
>> > > 4270451632
>> > > 28 clang 0x000000001017f314 cc1_main(char const**,
>> > > char
>> > > const**, char const*, void*) + 4270405844
>> > > 29 clang 0x0000000010187cc4 main + 4270440492
>> > > 30 libc.so.6 0x00000080a0bcbcf8
>> > > 31 libc.so.6 0x00000080a0bcbef0 __libc_start_main +
>> > > 4293374496
>> > > Stack dump:
>> > > 0. Program arguments:
>> > > /gpfs/bbp.cscs.ch/home/biddisco/apps/clang/bgclang/r206161-
>> > 20140414/bi
>> > > n/clang
>> > > -cc1 -triple powerpc64-unknown-linux-gnu -S -disable-free
>> > > -main-file-name assoc_laguerre.cpp -mrelocation-model pic
>> > > -pic-level
>> > > 2 -mdisable-fp-elim -fmath-errno -no-integrated-as
>> > > -mconstructor-aliases -target-cpu a2 -target-linker-version
>> > > 2.20.51.0.2 -g -coverage-file /tmp/assoc_laguerre-131f32.s
>> > > -resource-dir
>> > > /gpfs/bbp.cscs.ch/home/biddisco/apps/clang/bgclang/r206161-
>> > 20140414/bi
>> > > n/../lib/clang/3.5.0 -D BOOST_NO_FENV_H -D BOOST_NO_FENV_H -D
>> > > BOOST_ALL_NO_LIB=1 -D BOOST_BUILD_PCH_ENABLED -D
>> > > BOOST_MATH_TR1_DYN_LINK=1 -I
>> > >
>>/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
>> > > +/4.7.2/
>> > > -I
>> > >
>>/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
>> > > +/4.7.2/powerpc64-bgq-linux
>> > > -I
>> > >
>>/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
>> > > +/4.7.2/
>> > > -I
>> > >
>>/bgsys/drivers/ppcfloor/gnu-linux-4.7.2/powerpc64-bgq-linux/include/c+
>> > > +/4.7.2/powerpc64-bgq-linux -I . -I libs/math/src/tr1
>> > > -internal-isystem
>> > > /usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/c++/4.4.7
>> > > -internal-isystem
>> > >
>>/usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/pp
>> > > c64-redhat-linux
>> > > -internal-isystem
>> > >
>>/usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ba
>> > > ckward
>> > > -internal-isystem
>> > >
>>/usr/lib/gcc/ppc64-redhat-linux/4.4.7/../../../../include/ppc64-redhat
>> > > -linux/c++/4.4.7 -internal-isystem /usr/local/include
>> > > -internal-isystem
>> > > /gpfs/bbp.cscs.ch/home/biddisco/apps/clang/bgclang/r206161-
>> > 20140414/bi
>> > > n/../lib/clang/3.5.0/include -internal-externc-isystem /include
>> > > -internal-externc-isystem /usr/include -O0 -Winvalid-pch -Wall
>> > > -Winvalid-pch -std=gnu++11 -fdeprecated-macro
>> > > -fno-dwarf-directory-asm
>> > > -fdebug-compilation-dir
>> > > /gpfs/bbp.cscs.ch/home/biddisco/bgas/clang/build/boost_1_55_0
>> > > -ferror-limit 19 -fmessage-length 0 -pthread -mstackrealign
>> > > -fno-signed-char -fno-inline -fobjc-runtime=gcc -fcxx-exceptions
>> > > -fexceptions -fdiagnostics-show-option -vectorize-slp
>> > > -include-pth
>> > >
>>bin.v2/libs/math/build/clang-linux-3.5.0/debug/architecture-power/thre
>> > > ading-multi/../src/tr1/pch.hpp.pth
>> > > -o /tmp/assoc_laguerre-131f32.s -x c++
>> > > libs/math/build/../src/tr1/assoc_laguerre.cpp
>> > > 1. <unknown> parser at unknown location
>> > > 2. ./boost/math/special_functions/hankel.hpp:12:1: parsing
>> > namespace
>> > > 'boost'
>> > > clang: error: unable to execute command: Aborted (core dumped)
>> > > clang: error: clang frontend command failed due to signal (use -v
>> > > to
>> > > see invocation) clang version 3.5.0 (trunk)
>> > > Target: powerpc64-unknown-linux-gnu
>> > > Thread model: posix
>> > > clang: note: diagnostic msg: PLEASE submit a bug report to
>> > > http://llvm.org/bugs/ and include the crash backtrace,
>> > > preprocessed
>> > > source, and associated run script.
>> > > clang: note: diagnostic msg:
>> > > ********************
>> > >
>> > > PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
>> > > Preprocessed source(s) and associated run script(s) are located
>> > > at:
>> > > clang: note: diagnostic msg: /tmp/assoc_laguerre-ba076b.cpp
>> > > clang: note: diagnostic msg: /tmp/assoc_laguerre-ba076b.sh
>> > > clang: note: diagnostic msg:
>> > >
>> > > ********************
>> > >
>> >
>> > --
>> > Hal Finkel
>> > Assistant Computational Scientist
>> > Leadership Computing Facility
>> > Argonne National Laboratory
>>
>
>--
>Hal Finkel
>Assistant Computational Scientist
>Leadership Computing Facility
>Argonne National Laboratory
More information about the llvm-bgq-discuss
mailing list